Yamaha FJR1300A/AE 2007 Service Manual (P/N LIT-11616-19–83)

• Covers FJR13AV(C) and FJR13AEV(C) USA and California configurations, with separate material for the conventional hydraulic clutch and YCC-S shifting system.
• Engine repair extends to removal, cylinder-head and valve service, camshaft timing, crankshaft-bearing selection, and transmission disassembly.
• AE-specific procedures address clutch and shift actuator replacement, hydraulic clutch bleeding, pressure-plate stroke checks, gear-position setting, and clutch-engagement-point adjustment.
• Fuel injection troubleshooting includes ECU fault codes, sensor readings, injector and ignition-coil actuation tests, fuel-pressure testing, and throttle-body synchronization.
• Unified braking and ABS coverage includes caliper and master-cylinder repair, hydraulic-unit operation tests, wheel-sensor diagnosis, bleeding, and post-repair checks.
• Shaft-drive service covers final-gear disassembly, backlash measurement, and shim selection. Chassis procedures include front-fork rebuilding and steering-head and swingarm bearing inspection.

Model Identification and A/AE Differences

This 704-page PDF contains Yamaha service manual P/N LIT-11616-19-83, first edition April 2006. The cover also carries document code 3P6-28197-10.

The specifications identify FJR13A model codes 3P64 (USA) / 3P65 (California) and FJR13AE codes 2D24 (USA) / 2D25 (California). California-specific material covers the evaporative-emissions canister, rollover valve, and hose routing.

Both models use a five-speed gearbox and shaft drive. The A model has a rider-operated clutch lever; the AE model's motor control unit operates the clutch and shift actuators in response to hand or foot shift commands. YCC-S is not an automatic transmission.

Engine, Clutch, and Final-Drive Repair

The internal engine chapters detail valve-pad selection, valve-guide and seat service, piston and ring inspection, and balancer adjustment. Clutch repair covers the friction plates, master cylinder, and release cylinder.

Middle-gear setup has its own backlash and shim procedures, separate from rear final-drive work. The special-tool references identify the final gear backlash band, YM-01230 / 90890-01511. Shaft-drive cautions explain how insufficient backlash can damage the gear teeth.

Electrical Diagnosis and Wiring Diagrams

The electrical chapters list sensor output parameters, relay locations, connector identification, and system-specific fault-isolation charts. YCC-S diagnostics include stored-fault retrieval and actuator operation checks. Its gear-position sensor installation section warns that incorrect transmission positioning can damage the sensor.

The ABS Coupler Location Chart and YCC-S circuit diagrams support fault tracing between sensors, actuators, and their control units. Yamaha's test coupler adapter 90890-03149 is specified for ABS testing and YCC-S diagnosis.

ABS component scope: the hydraulic unit, ABS ECU, wheel sensors, and ABS motor relay are treated as non-disassemblable assemblies, not internally rebuildable components.

Separate FJR13AV(C) 2006 Wiring Diagrams and FJR13AEV(C) 2006 Wiring Diagrams identify connector terminals and wire colors. Ignition, starting-interlock, and charging faults have dedicated checks. Accessory-circuit troubleshooting covers the electric windshield, accessory-box solenoid, and AE grip warmers.

Engineering Data and Lubrication Reference

The Engine Oil Lubrication Chart and Cooling System Diagrams trace oil delivery and coolant routing. Related repair sections cover oil-pump rotor inspection, oil-cooler service, and water-pump mechanical-seal replacement. Radiator-cap pressure testing, thermostat checks, and fan-motor testing are also covered.

Engine and chassis torque tables include frame mounting specifications and staged tightening procedures for the cylinder head and crankcase. Fluid capacities, valve clearances, wear limits, baseline suspension settings, and electrical test values accompany the relevant assemblies.

Fuel-system and heavy chassis work require a safe, well-ventilated workspace, secure motorcycle support, and the manual's precautions for residual fuel pressure and brake-system service.

Note: This page provides a contents overview of the publication to assist in your purchase. It does not contain step-by-step repair or diagnostic instructions.